STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
bdhD-beta-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)    
Predicted Functional Partners:
GLE_4971
Short chain dehydrogenase/NAD dependent epimerase/dehydratase family.
 
    
0.918
GLE_2861
Lipoprotein.
    
  0.878
scoB
succinyl-CoA:3-ketoacid-coenzyme A transferase, subunit B.
   
  0.873
mvaB
Hydroxymethylglutaryl-CoA lyase.
   
 
  0.872
GLE_4228
3-oxoacid CoA-transferase, A subunit family.
     
  0.872
GLE_1264
Patatin- like phospholipase.
 
  
  0.833
GLE_4894
Amino acid adenylation domain protein.
  
 0.757
gltB
Glutamine amidotransferases class-II/glutamate synthase.
     
 0.728
GLE_2622
Isochorismatase.
  
 
 0.658
phbB-3
acetoacetyl-CoA reductase.
 
    
0.563
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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