STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_13074,5-dopa dioxygenase extradiol. (263 aa)    
Predicted Functional Partners:
GLE_4555
Phospholipase/carboxylesterase.
      0.904
GLE_1306
Hypothetical protein.
       0.697
GLE_3067
Oxidoreductase.
     
 0.675
GLE_4392
Oxidoreductase.
     
 0.675
GLE_4803
Amidohydrolase family protein.
 
      0.599
GLE_1608
Pirin-like protein; Belongs to the pirin family.
 
  
 0.528
GLE_0566
Cupin domain protein; Belongs to the pirin family.
 
  
 0.513
GLE_1173
Rieske 2Fe-2S domain protein.
    
 0.509
GLE_1615
Pirin domain protein; Belongs to the pirin family.
 
  
 0.504
prpD
2-methylcitrate dehydratase.
       0.489
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.