STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1322Rhs element Vgr protein. (444 aa)    
Predicted Functional Partners:
GLE_1323
Hypothetical protein.
       0.773
GLE_0443
Type IV / VI secretion system protein, DotU family.
 
  
 0.730
tssJ
Type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.724
tssK
Type VI secretion protein, VC_A0114 family.
 
    0.712
GLE_0449
Hypothetical protein.
 
     0.712
icmF
Type VI secretion protein IcmF.
 
   
 0.710
GLE_1320
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
       0.709
GLE_1321
Hypothetical protein.
       0.709
ply
L-alanyl-D-glutamate peptidase.
 
     0.695
GLE_0436
Type VI secretion system Vgr family protein.
     0.668
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.