STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1394Hypothetical protein. (358 aa)    
Predicted Functional Partners:
GLE_1395
Fatty acid desaturase.
 
     0.849
GLE_3398
Hypothetical protein.
  
     0.721
GLE_2713
yiaA/B two helix domain family protein.
  
     0.650
GLE_1281
Tetratricopeptide repeat domain protein.
  
     0.534
GLE_1393
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.503
GLE_5023
Membrane protein.
  
     0.445
GLE_1381
RNA methylase family; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.439
GLE_0373
Hypothetical protein.
  
     0.431
GLE_1392
Hypothetical protein.
       0.425
GLE_5024
Membrane protein.
  
     0.407
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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