Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1556Hypothetical protein. (497 aa)    
Predicted Functional Partners:
GLE_1555
Hypothetical protein.
 
   0.955
GLE_1554
Von Willebrand factor, type A.
 
     0.941
GLE_1557
Membrane protein.
       0.777
GLE_1767
Outer membrane autotransporter barrel domain protein.
  
    0.656
GLE_4707
N-acetylmuramoyl-L-alanine amidase.
  
     0.629
GLE_2536
Glycosyl hydrolase, family 9.
  
     0.578
GLE_0632
Sensory box histidine kinase.
    
 0.577
GLE_4072
Transporter, monovalent cation:proton antiporter-2 (CPA2) family.
  
     0.572
GLE_4706
SpoIID/LytB domain protein.
  
     0.572
GLE_4424
Hypothetical protein.
  
     0.568
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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