Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1704Anti sigma-E protein. (328 aa)    
Predicted Functional Partners:
rpoE
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.941
degQ
Protease DeqQ precursor; Belongs to the peptidase S1C family.
  
 
 0.931
GLE_4451
Periplasmic serine protease, Do/DeqQ family; Belongs to the peptidase S1C family.
  
 
 0.837
sspB
Stringent starvation protein B.
    
 
 0.805
GLE_1066
Peptidase.
  
 
 0.749
cvpA
Colicin V production protein.
  
 
 0.749
GLE_3050
Trypsin.
  
 
 0.749
GLE_4671
RNA polymerase sigma-E factor, ECR family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.684
GLE_1785
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.653
sigV
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.653
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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