STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbBacetoacetyl-CoA reductase. (246 aa)    
Predicted Functional Partners:
phaC
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit.
  
 
 0.964
GLE_2859
PHA synthase subunit.
  
  
  0.933
phbB-2
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
0.932
fadJ
Fatty acid oxidation complex subunit alpha.
  
 0.928
fadB
3-hydroxyacyl-CoA dehydrogenase.
  
 0.928
GLE_1971
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  0.919
phbB-3
acetoacetyl-CoA reductase.
  
  
 
0.910
GLE_5043
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
  0.908
scoB
succinyl-CoA:3-ketoacid-coenzyme A transferase, subunit B.
 
 
  0.904
GLE_4228
3-oxoacid CoA-transferase, A subunit family.
   
  0.904
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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