STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1847Hydrolase, alpha/beta fold family protein. (299 aa)    
Predicted Functional Partners:
dmpD
2-hydroxymuconic semialdehyde hydrolase.
  
     0.752
GLE_4518
PGAP1-like protein.
  
  
  0.692
GLE_0232
Hydrolase, alpha/beta hydrolase fold family protein.
  
     0.676
GLE_2508
Hydrolase, alpha/beta fold family.
  
     0.665
arcA
Arginine deiminase.
  
     0.640
GLE_1846
Hypothetical protein.
    
  0.607
GLE_2995
NAD dependent epimerase/dehydratase family.
 
  
 0.490
GLE_0117
Hydrolase, alpha/beta fold family.
  
  
  0.470
GLE_1849
Hypothetical protein.
 
 
   0.467
GLE_1848
Condensation/amino acid adenylation/thioesterase domain protein; Belongs to the ATP-dependent AMP-binding enzyme family.
   
  0.463
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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