STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1879Dyp-type peroxidase family protein. (327 aa)    
Predicted Functional Partners:
GLE_3300
Hypothetical protein.
  
    0.658
GLE_5127
Hypothetical protein.
  
    0.658
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
 
      0.526
GLE_0677
Dihydrolipoyl dehydrogenase.
     
 0.518
GLE_1928
3-hydroxyacyl-coa dehydrogenase type II; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
      0.501
GLE_1878
Hypothetical protein.
       0.497
GLE_2369
Esterase/lipase/thioesterase domain-containing protein.
  
     0.487
pheA
Chorismate mutase/prephenate dehydratase/ACT domain.
     
 0.436
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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