Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1894Oxidoreductase, 2OG-Fe(II) oxygenase family. (182 aa)    
Predicted Functional Partners:
GLE_2622
Isochorismatase.
   
    0.797
GLE_5255
Hypothetical protein.
  
     0.685
putA
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.661
GLE_1664
Hypothetical protein.
  
     0.640
GLE_2108
Hypothetical protein.
  
     0.551
GLE_4731
Hypothetical protein.
  
     0.534
hutH
Histidine ammonia-lyase.
       0.440
GLE_4660
Hypothetical protein.
  
     0.439
recBCD
Exodeoxyribonuclease V.
  
     0.429
GLE_4459
Hypothetical protein.
  
     0.424
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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