GLE_1967 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_1967

methylcrotonoyl-CoA carboxylase. (536 aa)

Predicted Functional Partners:

GLE_1950

0.999

GLE_1974

0.993

GLE_1954

0.986

accC

0.965

fadJ

0.949

mvaB

0.924

GLE_2346

0.903

hppD

0.894

fadB

0.846

GLE_4894

0.835

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_1950	GLE_1954	GLE_1950	GLE_1954	methylcrotonoyl-CoA carboxylase subunit alpha.	enoyl-CoA hydratase.	0.958
GLE_1950	GLE_1967	GLE_1950	GLE_1967	methylcrotonoyl-CoA carboxylase subunit alpha.	methylcrotonoyl-CoA carboxylase.	0.999
GLE_1950	GLE_1974	GLE_1950	GLE_1974	methylcrotonoyl-CoA carboxylase subunit alpha.	Acyl-CoA dehydrogenase, C-terminal domain.	0.949
GLE_1950	GLE_2346	GLE_1950	GLE_2346	methylcrotonoyl-CoA carboxylase subunit alpha.	acyl-CoA dehydrogenase.	0.897
GLE_1950	GLE_4894	GLE_1950	GLE_4894	methylcrotonoyl-CoA carboxylase subunit alpha.	Amino acid adenylation domain protein.	0.930
GLE_1950	accC	GLE_1950	GLE_0767	methylcrotonoyl-CoA carboxylase subunit alpha.	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.640
GLE_1950	fadB	GLE_1950	GLE_2913	methylcrotonoyl-CoA carboxylase subunit alpha.	3-hydroxyacyl-CoA dehydrogenase.	0.785
GLE_1950	fadJ	GLE_1950	GLE_1702	methylcrotonoyl-CoA carboxylase subunit alpha.	Fatty acid oxidation complex subunit alpha.	0.929
GLE_1950	hppD	GLE_1950	GLE_4305	methylcrotonoyl-CoA carboxylase subunit alpha.	4-hydroxyphenylpyruvate dioxygenase SEQUENCING GAP.	0.684
GLE_1950	mvaB	GLE_1950	GLE_1948	methylcrotonoyl-CoA carboxylase subunit alpha.	Hydroxymethylglutaryl-CoA lyase.	0.984
GLE_1954	GLE_1950	GLE_1954	GLE_1950	enoyl-CoA hydratase.	methylcrotonoyl-CoA carboxylase subunit alpha.	0.958
GLE_1954	GLE_1967	GLE_1954	GLE_1967	enoyl-CoA hydratase.	methylcrotonoyl-CoA carboxylase.	0.986
GLE_1954	GLE_1974	GLE_1954	GLE_1974	enoyl-CoA hydratase.	Acyl-CoA dehydrogenase, C-terminal domain.	0.775
GLE_1954	GLE_2346	GLE_1954	GLE_2346	enoyl-CoA hydratase.	acyl-CoA dehydrogenase.	0.731
GLE_1954	GLE_4894	GLE_1954	GLE_4894	enoyl-CoA hydratase.	Amino acid adenylation domain protein.	0.524
GLE_1954	accC	GLE_1954	GLE_0767	enoyl-CoA hydratase.	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.565
GLE_1954	fadB	GLE_1954	GLE_2913	enoyl-CoA hydratase.	3-hydroxyacyl-CoA dehydrogenase.	0.459
GLE_1954	fadJ	GLE_1954	GLE_1702	enoyl-CoA hydratase.	Fatty acid oxidation complex subunit alpha.	0.681
GLE_1954	mvaB	GLE_1954	GLE_1948	enoyl-CoA hydratase.	Hydroxymethylglutaryl-CoA lyase.	0.995
GLE_1967	GLE_1950	GLE_1967	GLE_1950	methylcrotonoyl-CoA carboxylase.	methylcrotonoyl-CoA carboxylase subunit alpha.	0.999