STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampRHTH-type transcriptional activator AmpR; Belongs to the LysR transcriptional regulatory family. (290 aa)    
Predicted Functional Partners:
GLE_2409
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.698
GLE_4909
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.670
GLE_1232
HTH-type transcriptional regulator CysB; Belongs to the LysR transcriptional regulatory family.
  
     0.637
GLE_4773
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.533
bla-2
Beta-lactamase.
  
   
 0.494
GLE_2036
Hypothetical protein.
       0.456
oxyR
Transcriptional regulator, LysR family/LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.409
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
      
 0.408
GLE_2034
Lipoprotein.
       0.407
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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