STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2106ABC transporter, permease protein, ABC-2 family. (351 aa)    
Predicted Functional Partners:
GLE_2105
ABC transporter, ATP-binding protein.
 
 
  0.913
GLE_3609
ABC transporter, ATP-binding protein.
 
 
  0.834
GLE_2104
Linear gramicidin synthetase subunit C.
       0.773
GLE_3610
Secretion protein HlyD family protein.
 
     0.761
GLE_3608
ABC-2 type transporter.
  
  
 
0.547
ectB
Diaminobutyrate--2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.533
GLE_2108
Hypothetical protein.
       0.533
fabD
Malonyl CoA-acyl carrier protein transacylase.
       0.518
GLE_4246
ABC-2 type transporter.
    
  0.470
GLE_0795
Nitroreductase family protein.
  
    0.444
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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