GLE_2234 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE_2234

Gram-negative bacterial tonB protein. (157 aa)

Predicted Functional Partners:

GLE_3343

0.701

GLE_4802

0.676

GLE_4994

0.643

GLE_3630

0.519

GLE_1657

0.459

GLE_4254

0.447

GLE_2271

0.412

murB

0.411

dnaJ

0.410

GLE_3584

0.410

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_1657	GLE_2234	GLE_1657	GLE_2234	Transglycosylase SLT domain/LysM domain.	Gram-negative bacterial tonB protein.	0.459
GLE_1657	GLE_4994	GLE_1657	GLE_4994	Transglycosylase SLT domain/LysM domain.	Immunogenic 75 kDa protein PG4.	0.419
GLE_2234	GLE_1657	GLE_2234	GLE_1657	Gram-negative bacterial tonB protein.	Transglycosylase SLT domain/LysM domain.	0.459
GLE_2234	GLE_2271	GLE_2234	GLE_2271	Gram-negative bacterial tonB protein.	Beta-hexosaminidase.	0.412
GLE_2234	GLE_3343	GLE_2234	GLE_3343	Gram-negative bacterial tonB protein.	Lipoprotein.	0.701
GLE_2234	GLE_3584	GLE_2234	GLE_3584	Gram-negative bacterial tonB protein.	Oar protein.	0.410
GLE_2234	GLE_3630	GLE_2234	GLE_3630	Gram-negative bacterial tonB protein.	Membrane protein.	0.519
GLE_2234	GLE_4254	GLE_2234	GLE_4254	Gram-negative bacterial tonB protein.	Outer membrane protein.	0.447
GLE_2234	GLE_4802	GLE_2234	GLE_4802	Gram-negative bacterial tonB protein.	AMP nucleosidase.	0.676
GLE_2234	GLE_4994	GLE_2234	GLE_4994	Gram-negative bacterial tonB protein.	Immunogenic 75 kDa protein PG4.	0.643
GLE_2234	dnaJ	GLE_2234	GLE_2233	Gram-negative bacterial tonB protein.	Chaperone protein dnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.410
GLE_2234	murB	GLE_2234	GLE_1757	Gram-negative bacterial tonB protein.	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.	0.411
GLE_2271	GLE_2234	GLE_2271	GLE_2234	Beta-hexosaminidase.	Gram-negative bacterial tonB protein.	0.412
GLE_3343	GLE_2234	GLE_3343	GLE_2234	Lipoprotein.	Gram-negative bacterial tonB protein.	0.701
GLE_3343	GLE_3630	GLE_3343	GLE_3630	Lipoprotein.	Membrane protein.	0.415
GLE_3343	GLE_4802	GLE_3343	GLE_4802	Lipoprotein.	AMP nucleosidase.	0.466
GLE_3584	GLE_2234	GLE_3584	GLE_2234	Oar protein.	Gram-negative bacterial tonB protein.	0.410
GLE_3630	GLE_2234	GLE_3630	GLE_2234	Membrane protein.	Gram-negative bacterial tonB protein.	0.519
GLE_3630	GLE_3343	GLE_3630	GLE_3343	Membrane protein.	Lipoprotein.	0.415
GLE_4254	GLE_2234	GLE_4254	GLE_2234	Outer membrane protein.	Gram-negative bacterial tonB protein.	0.447