GLE_2248 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE_2248

Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold. (718 aa)

Predicted Functional Partners:

GLE_2247

0.938

GLE_2246

0.936

GLE_3067

0.924

GLE_4392

0.924

GLE_2255

0.916

wecC

0.876

dkgB

0.811

tkB

0.778

GLE_0267

0.755

ugd

0.747

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0267	GLE_2248	GLE_0267	GLE_2248	Tat (twin-arginine translocation) pathway signal sequence domain protein.	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	0.755
GLE_0267	dkgB	GLE_0267	GLE_5346	Tat (twin-arginine translocation) pathway signal sequence domain protein.	2,5-diketo-d-gluconic acid reductase B.	0.487
GLE_2246	GLE_2247	GLE_2246	GLE_2247	Glycosyl transferase, group 1 family protein.	Heparinase II/III family protein.	0.968
GLE_2246	GLE_2248	GLE_2246	GLE_2248	Glycosyl transferase, group 1 family protein.	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	0.936
GLE_2246	GLE_2255	GLE_2246	GLE_2255	Glycosyl transferase, group 1 family protein.	UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.	0.968
GLE_2246	wecC	GLE_2246	GLE_2254	Glycosyl transferase, group 1 family protein.	NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	0.925
GLE_2247	GLE_2246	GLE_2247	GLE_2246	Heparinase II/III family protein.	Glycosyl transferase, group 1 family protein.	0.968
GLE_2247	GLE_2248	GLE_2247	GLE_2248	Heparinase II/III family protein.	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	0.938
GLE_2247	GLE_2255	GLE_2247	GLE_2255	Heparinase II/III family protein.	UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.	0.748
GLE_2247	wecC	GLE_2247	GLE_2254	Heparinase II/III family protein.	NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	0.650
GLE_2248	GLE_0267	GLE_2248	GLE_0267	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	Tat (twin-arginine translocation) pathway signal sequence domain protein.	0.755
GLE_2248	GLE_2246	GLE_2248	GLE_2246	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	Glycosyl transferase, group 1 family protein.	0.936
GLE_2248	GLE_2247	GLE_2248	GLE_2247	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	Heparinase II/III family protein.	0.938
GLE_2248	GLE_2255	GLE_2248	GLE_2255	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.	0.916
GLE_2248	GLE_3067	GLE_2248	GLE_3067	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	Oxidoreductase.	0.924
GLE_2248	GLE_4392	GLE_2248	GLE_4392	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	Oxidoreductase.	0.924
GLE_2248	dkgB	GLE_2248	GLE_5346	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	2,5-diketo-d-gluconic acid reductase B.	0.811
GLE_2248	tkB	GLE_2248	GLE_3052	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	Transketolase.	0.778
GLE_2248	ugd	GLE_2248	GLE_2703	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	Udp-glucose 6-dehydrogenase.	0.747
GLE_2248	wecC	GLE_2248	GLE_2254	Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.	NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	0.876