Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2251Membrane protein. (397 aa)    
Predicted Functional Partners:
GLE_2253
Polysaccharide biosynthesis protein.
  
  
 0.804
nodL
Nodulation protein L.
       0.746
manA
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.741
wecC
NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.615
GLE_2255
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.614
GLE_2249
Hypothetical protein.
       0.610
GLE_2250
Glycosyl transferase.
       0.610
GLE_4894
Amino acid adenylation domain protein.
  
 
  0.567
GLE_2248
Oxidoreductase, zinc-binding dehydrogenase family/NAD-binding Rossmann fold.
       0.543
GLE_2246
Glycosyl transferase, group 1 family protein.
  
 
  0.508
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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