Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_2259Low molecular weight phosphotyrosine protein phosphatase. (143 aa)    
Predicted Functional Partners:
epsB
Tyrosine-protein kinase.
 
 0.946
ptpA
Low molecular weight protein-tyrosine-phosphatase.
  
  
 
0.903
GLE_2261
Polysaccharide biosynthesis/export protein.
 
 
 0.836
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.574
GLE_2260
Hypothetical protein.
       0.514
GLE_0615
Hypothetical protein.
  
 
 0.482
trx
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.482
hflC
HflC protein; HflC and HflK could regulate a protease.
  
    0.468
GLE_2255
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
 0.466
GLE_2455
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.448
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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