Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GLE_2274Vault protein inter-alpha-trypsin domain protein. (1029 aa)    
Predicted Functional Partners:
GLE_2275
Hypothetical protein.
       0.709
GLE_2532
TonB-dependent receptor.
  
     0.669
GLE_1767
Outer membrane autotransporter barrel domain protein.
  
     0.537
GLE_0320
PAAR motif family protein.
  
     0.492
ply
L-alanyl-D-glutamate peptidase.
  
     0.480
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.440
GLE_2273
Glycosyl hydrolase, family 2.
       0.438
GLE_5273
Hypothetical protein.
 
  
 0.429
GLE_2740
Alpha-2-macroglobulin family N- region; Protects the bacterial cell from host peptidases.
 
  
 0.409
GLE_2115
Alpha-2-macroglobulin family N- region.
 
  
 0.403
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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