Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_2328Hemolysin activation/secretion protein family. (501 aa)    
Predicted Functional Partners:
GLE_2329
Transporter, MotA/TolQ/ExbB proton channel family.
 
    0.940
GLE_2332
Hypothetical protein.
 
  
 0.925
GLE_2335
Filamentous hemagglutinin family outer membrane protein.
 
 0.896
GLE_2331
TonB family C-terminal domain.
 
     0.885
GLE_2330
Transport energizing protein, ExbD/TolR family.
 
     0.854
GLE_3988
POTRA domain, ShlB-type.
  
  
  0.773
GLE_2333
Hypothetical protein.
  
  
 0.588
GLE_4589
Outer membrane autotransporter barrel domain protein.
 
 0.517
GLE_3922
Hypothetical protein.
  
     0.452
GLE_4579
Peptidase, families S8 and S53/outer membrane autotransporter barrel domain.
  
  
 0.416
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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