Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GLE_2329Transporter, MotA/TolQ/ExbB proton channel family. (606 aa)    
Predicted Functional Partners:
GLE_2330
Transport energizing protein, ExbD/TolR family.
 
 
 0.978
GLE_2331
TonB family C-terminal domain.
 
 
 0.962
GLE_2332
Hypothetical protein.
 
  
 0.947
GLE_2328
Hemolysin activation/secretion protein family.
 
    0.940
GLE_2335
Filamentous hemagglutinin family outer membrane protein.
 
    0.853
GLE_5329
Transport energizing protein, ExbD/TolR family.
 
 
 0.745
GLE_5327
Transport energizing protein, ExbD/TolR family.
 
 
 0.732
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.724
GLE_2333
Hypothetical protein.
  
  
 0.715
GLE_5328
Biopolymer transport exbD2 protein, putative.
 
 
 0.707
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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