Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2382TonB dependent receptor. (523 aa)    
Predicted Functional Partners:
GLE_2199
TonB-dependent receptor.
  
     0.683
GLE_2272
TonB-dependent outer membrane receptor.
  
     0.605
GLE_2269
TonB-dependent outer membrane receptor.
  
     0.578
GLE_2383
Hypothetical protein.
       0.572
GLE_0733
TonB-dependent receptor.
  
     0.529
GLE_3653
TonB-dependent receptor.
  
     0.528
GLE_0542
Nucleotidyl transferase family.
  
     0.520
GLE_1426
TonB-dependent receptor.
  
     0.515
GLE_0841
TonB-dependent outer membrane receptor.
  
     0.480
GLE_5160
TonB-dependent receptor.
  
     0.478
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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