GLE_2505 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_2505

Efflux ABC transporter, permease protein. (395 aa)

Predicted Functional Partners:

GLE_2502

0.940

GLE_4463

0.903

lolD

0.881

GLE_2504

0.841

GLE_4462

0.804

GLE_0699

0.782

lolA

0.735

GLE_3932

0.728

GLE_5215

0.699

GLE_4209

0.672

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0699	GLE_2504	GLE_0699	GLE_2504	ABC transporter.	Efflux ABC transporter, permease protein.	0.649
GLE_0699	GLE_2505	GLE_0699	GLE_2505	ABC transporter.	Efflux ABC transporter, permease protein.	0.782
GLE_0699	GLE_4462	GLE_0699	GLE_4462	ABC transporter.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.542
GLE_0699	lolA	GLE_0699	GLE_2320	ABC transporter.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.400
GLE_2502	GLE_2504	GLE_2502	GLE_2504	ABC transporter, ATP-binding protein.	Efflux ABC transporter, permease protein.	0.934
GLE_2502	GLE_2505	GLE_2502	GLE_2505	ABC transporter, ATP-binding protein.	Efflux ABC transporter, permease protein.	0.940
GLE_2502	GLE_4462	GLE_2502	GLE_4462	ABC transporter, ATP-binding protein.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.751
GLE_2502	lolA	GLE_2502	GLE_2320	ABC transporter, ATP-binding protein.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.400
GLE_2504	GLE_0699	GLE_2504	GLE_0699	Efflux ABC transporter, permease protein.	ABC transporter.	0.649
GLE_2504	GLE_2502	GLE_2504	GLE_2502	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.934
GLE_2504	GLE_2505	GLE_2504	GLE_2505	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.841
GLE_2504	GLE_3932	GLE_2504	GLE_3932	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.588
GLE_2504	GLE_4209	GLE_2504	GLE_4209	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.576
GLE_2504	GLE_4462	GLE_2504	GLE_4462	Efflux ABC transporter, permease protein.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.805
GLE_2504	GLE_4463	GLE_2504	GLE_4463	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.887
GLE_2504	GLE_5215	GLE_2504	GLE_5215	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.524
GLE_2504	lolA	GLE_2504	GLE_2320	Efflux ABC transporter, permease protein.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.438
GLE_2504	lolD	GLE_2504	GLE_3038	Efflux ABC transporter, permease protein.	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.583
GLE_2505	GLE_0699	GLE_2505	GLE_0699	Efflux ABC transporter, permease protein.	ABC transporter.	0.782
GLE_2505	GLE_2502	GLE_2505	GLE_2502	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.940