Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2513Hypothetical protein. (706 aa)    
Predicted Functional Partners:
GLE_2515
Cyclic beta 1-2 glucan synthase.
 
    
0.573
GLE_2514
Hypothetical protein.
       0.566
GLE_0254
Phosphomannomutase.
    
 0.503
galU
UTP-glucose-1-phosphate uridylyltransferase.
    
  0.501
amyA
Cyclomaltodextrin glucanotransferase.
     
 0.487
GLE_3654
Glycosyl hydrolase, family 31.
     
 0.473
nolNO
Nodulation protein nolO.
       0.447
GLE_2511
Hypothetical protein.
       0.422
GLE_0338
Alpha,alpha-phosphotrehalase.
     
 0.421
GLE_2523
Beta-glucosidase.
    
 0.410
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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