STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2530Radical SAM domain protein. (390 aa)    
Predicted Functional Partners:
GLE_2531
Hypothetical protein.
       0.746
GLE_2528
Membrane protein.
 
     0.721
GLE_2529
ABC transporter, ATP-binding protein.
 
    0.701
GLE_2527
Membrane protein.
 
     0.678
GLE_2525
Oxidoreductase.
       0.636
GLE_2526
Hypothetical protein.
       0.636
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.609
GLE_0379
Hypothetical protein.
  
     0.464
GLE_3458
Cyclic diguanylate phosphodiesterase/diguanylate cyclase.
     
  0.458
nolNO
Nodulation protein nolO.
 
    0.427
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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