STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2532TonB-dependent receptor. (899 aa)    
Predicted Functional Partners:
GLE_5088
TonB-dependent receptor.
  
  
  0.779
GLE_3653
TonB-dependent receptor.
  
  
  0.775
GLE_0130
TonB-dependent receptor.
  
  
  0.766
GLE_2533
Transporter, major facilitator family.
 
     0.766
GLE_5057
TonB-dependent receptor.
  
  
  0.755
GLE_3654
Glycosyl hydrolase, family 31.
  
     0.750
GLE_1426
TonB-dependent receptor.
  
  
  0.742
GLE_4072
Transporter, monovalent cation:proton antiporter-2 (CPA2) family.
  
     0.741
GLE_2272
TonB-dependent outer membrane receptor.
  
  
  0.732
GLE_0841
TonB-dependent outer membrane receptor.
  
  
  0.731
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.