STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2549TonB-dependent receptor. (742 aa)    
Predicted Functional Partners:
GLE_2552
TonB-dependent siderophore receptor.
 
  
 0.797
GLE_1530
TonB-dependent receptor.
  
   
 0.690
GLE_4092
TonB-dependent receptor.
  
  
  0.685
GLE_5026
TonB-dependent siderophore receptor.
  
    0.673
GLE_0715
TonB-dependent receptor.
  
  
  0.671
GLE_5404
TonB-dependent siderophore receptor.
  
     0.623
GLE_2547
Sigma factor regulatory protein, FecR/PupR family.
 
    0.619
GLE_2548
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.601
GLE_0919
TonB-dependent receptor.
  
   
 0.578
GLE_2272
TonB-dependent outer membrane receptor.
  
  
  0.569
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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