Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2557Amino acid adenylation domain protein. (2241 aa)    
Predicted Functional Partners:
GLE_2622
Isochorismatase.
 
 0.985
GLE_2497
mbtH family protein.
 
 0.959
GLE_3677
MbtH family protein.
 
 0.958
GLE_2556
Taurine catabolism dioxygenase TauD/TfdA.
  
 0.945
GLE_2621
Condensation domain protein.
 
  
 
0.944
yojl
ABC transporter ATP-binding protein yojI.
 
  
 0.934
GLE_2555
Thioesterase domain.
 
  
 0.890
GLE_2560
Amino acid adenylation domain protein.
 
 
0.885
GLE_3674
Taurine catabolism dioxygenase TauD/TfdA.
  
 0.881
GLE_1851
AMP-binding enzyme.
 
 
 
0.860
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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