STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2578Type VI secretion protein, VC_A0111 family. (350 aa)    
Predicted Functional Partners:
vasA-2
Type VI secretion protein, VC_A0110 family.
  
 0.982
tssE-2
Type VI secretion system lysozyme-related protein.
 
  
 0.965
GLE_2574
Hypothetical protein.
 
 
 0.959
GLE_2575
ImpE/SciE family protein.
 
    0.955
clpV-2
ClpV1 family type VI secretion ATPase; Belongs to the ClpA/ClpB family.
 
 
  0.949
tssA-2
Type VI secretion-associated protein, ImpA family.
 
 
 0.939
tssB-2
Type VI secretion protein, VC_A0107 family.
 
 
 0.935
tssC-2
Type VI secretion protein, EvpB/VC_A0108 family.
 
 
 0.924
tssA
Type VI secretion-associated protein, ImpA family.
 
 
 0.919
tssK-2
Type VI secretion protein, VC_A0114 family.
 
 
 0.913
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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