STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssK-2Type VI secretion protein, VC_A0114 family. (445 aa)    
Predicted Functional Partners:
GLE_2585
Type VI secretion system OmpA/MotB family protein.
 
 0.977
icmF-2
Type VI secretion protein IcmF.
 
 
 0.975
GLE_2587
Type VI secretion-associated protein, BMA_A0400 family.
 
 
 0.972
tssB-2
Type VI secretion protein, VC_A0107 family.
 
 
 0.971
tssB
Type VI secretion protein, VC_A0107 family.
 
 
 0.963
GLE_2583
Type VI secretion system FHA domain protein.
     0.962
tssG
Type VI secretion protein, VC_A0111 family.
 
 
 0.956
tssE-2
Type VI secretion system lysozyme-related protein.
 
  
 0.955
tssC-2
Type VI secretion protein, EvpB/VC_A0108 family.
 
 0.951
tssI
Type VI secretion system Vgr family protein.
 
  
 0.951
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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