Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2603Xylose isomerase; Belongs to the hyi family. (292 aa)    
Predicted Functional Partners:
GLE_2606
Hypothetical protein.
 
   
 0.933
GLE_2605
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.932
GLE_2604
GMC oxidoreductase family protein.
 
     0.925
GLE_2141
D-isomer specific 2-hydroxyacid dehydrogenase.
   
 
 0.876
GLE_2610
Transporter, major facilitator family.
 
     0.796
GLE_2608
AP endonuclease, family 2.
 
  
  0.791
GLE_0246
Oxidoreductase.
  
 
 0.775
GLE_0163
Hypothetical protein.
 
   
 0.774
GLE_2602
Hypothetical protein.
       0.773
GLE_4614
Oxidoreductase family, NAD-binding Rossmann fold.
 
    0.677
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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