Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2621Condensation domain protein. (422 aa)    
Predicted Functional Partners:
GLE_2622
Isochorismatase.
 
 0.997
dhbE
2,3-dihydroxybenzoate-AMP ligase.
 
  0.989
GLE_2560
Amino acid adenylation domain protein.
 
  0.986
GLE_1848
Condensation/amino acid adenylation/thioesterase domain protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
  0.978
GLE_2957
Hypothetical protein.
 
 
  0.978
GLE_2958
Linear gramicidin synthetase subunit C.
 
 
  0.978
GLE_3997
Linear gramicidin synthetase subunit D.
 
     0.975
GLE_2557
Amino acid adenylation domain protein.
 
  
 
0.944
GLE_0544
Linear gramicidin synthetase subunit C.
 
 
 
0.936
lgrB
Linear gramicidin synthetase subunit B.
 
 
 
0.936
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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