Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
copBCopper resistance protein B. (372 aa)    
Predicted Functional Partners:
copA
Copper resistance protein A.
  
 0.997
GLE_0790
Multicopper oxidase.
 
  
 0.944
cueO
Blue copper oxidase CueO.
 
  
 0.903
GLE_2630
Hypothetical protein.
 
     0.883
cueR
Cu(I)-responsive transcriptional regulator.
 
  
 0.812
GLE_4558
Outer membrane efflux protein.
  
  
 0.504
GLE_2627
Hypothetical protein.
       0.460
GLE_5222
Diguanylate cyclase.
  
     0.446
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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