Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2708Transcriptional regulator, GntR family. (130 aa)    
Predicted Functional Partners:
GLE_2709
ABC transporter, ATP-binding protein.
 
    0.953
GLE_2707
Hypothetical protein.
       0.801
GLE_2710
Hypothetical protein.
       0.792
GLE_1177
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.552
GLE_2711
Hypothetical protein.
       0.550
GLE_5195
Transcriptional regulator, GntR family.
  
  
 0.526
btuE
Glutathione peroxidase/vitamin B12 transport periplasmic protein btuE; Belongs to the glutathione peroxidase family.
       0.522
GLE_1384
mutT/nudix family protein.
   
    0.471
phnF
Phosphonates metabolism transcriptional regulator PhnF.
  
  
 0.406
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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