STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2709ABC transporter, ATP-binding protein. (299 aa)    
Predicted Functional Partners:
GLE_2708
Transcriptional regulator, GntR family.
 
  
 0.953
GLE_2710
Hypothetical protein.
       0.873
GLE_2707
Hypothetical protein.
       0.800
GLE_5023
Membrane protein.
  
 0.752
GLE_2711
Hypothetical protein.
 
     0.615
GLE_5024
Membrane protein.
  
  0.607
btuE
Glutathione peroxidase/vitamin B12 transport periplasmic protein btuE; Belongs to the glutathione peroxidase family.
       0.562
cysN
Bifunctional enzyme CysN/cysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.551
GLE_4213
ABC transporter, ATP-binding protein.
  
 
  0.517
GLE_2705
FKBP-type peptidyl-prolyl cis-trans isomerase.
   
   0.476
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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