Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2770Hypothetical protein. (502 aa)    
Predicted Functional Partners:
GLE_2769
Hypothetical protein.
       0.709
GLE_4579
Peptidase, families S8 and S53/outer membrane autotransporter barrel domain.
  
    0.535
GLE_2768
NAD-dependent epimerase/dehydratase.
       0.530
GLE_2771
Hypothetical protein.
       0.520
GLE_4578
Large Ala/Gln-rich protein.
 
      0.505
GLE_0704
Hypothetical protein.
  
     0.465
GLE_4966
Lipoprotein.
  
     0.457
GLE_1870
Biofilm PGA synthesis lipoprotein PgaB.
  
     0.430
GLE_1714
Hypothetical protein.
  
     0.420
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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