Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2778F5/8 type C domain. (1077 aa)    
Predicted Functional Partners:
GLE_2781
Bacterial extracellular solute-binding protein.
 
    0.857
pgmB
Beta-phosphoglucomutase.
     
 0.842
GLE_2780
ABC transporter, permease protein.
 
     0.782
GLE_2779
ABC transporter, permease protein.
 
     0.764
GLE_2897
Hypothetical protein.
  
     0.668
GLE_2782
Hypothetical protein.
 
     0.652
GLE_4177
General secretion pathway protein J.
  
     0.650
GLE_4894
Amino acid adenylation domain protein.
     
  0.644
GLE_4269
HAD-superfamily hydrolase, subfamily IB.
  
     0.624
otsA
Alpha,alpha-trehalose-phosphate synthase.
    
 0.613
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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