Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GLE_1317 | virD4 | GLE_1317 | GLE_2798 | HNH endonuclease domain protein. | VirD4 protein. | 0.863 |
| GLE_3554 | virD4 | GLE_3554 | GLE_2798 | HNH endonuclease domain protein. | VirD4 protein. | 0.863 |
| topA | virB10 | GLE_0349 | GLE_2820 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | VirB10 protein. | 0.432 |
| topA | virB11 | GLE_0349 | GLE_2819 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family. | 0.687 |
| topA | virB4 | GLE_0349 | GLE_2815 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | virB4 protein. | 0.731 |
| topA | virD4 | GLE_0349 | GLE_2798 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | VirD4 protein. | 0.736 |
| virB1 | virB10 | GLE_2818 | GLE_2820 | VirB1 protein. | VirB10 protein. | 0.944 |
| virB1 | virB11 | GLE_2818 | GLE_2819 | VirB1 protein. | VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family. | 0.946 |
| virB1 | virB3 | GLE_2818 | GLE_2816 | VirB1 protein. | VirB3 protein. | 0.630 |
| virB1 | virB4 | GLE_2818 | GLE_2815 | VirB1 protein. | virB4 protein. | 0.928 |
| virB1 | virB8 | GLE_2818 | GLE_2822 | VirB1 protein. | VirB8 protein. | 0.947 |
| virB1 | virB9 | GLE_2818 | GLE_2821 | VirB1 protein. | VirB9 protein. | 0.947 |
| virB1 | virD4 | GLE_2818 | GLE_2798 | VirB1 protein. | VirD4 protein. | 0.907 |
| virB10 | topA | GLE_2820 | GLE_0349 | VirB10 protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.432 |
| virB10 | virB1 | GLE_2820 | GLE_2818 | VirB10 protein. | VirB1 protein. | 0.944 |
| virB10 | virB11 | GLE_2820 | GLE_2819 | VirB10 protein. | VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family. | 0.986 |
| virB10 | virB3 | GLE_2820 | GLE_2816 | VirB10 protein. | VirB3 protein. | 0.921 |
| virB10 | virB4 | GLE_2820 | GLE_2815 | VirB10 protein. | virB4 protein. | 0.996 |
| virB10 | virB8 | GLE_2820 | GLE_2822 | VirB10 protein. | VirB8 protein. | 0.995 |
| virB10 | virB9 | GLE_2820 | GLE_2821 | VirB10 protein. | VirB9 protein. | 0.999 |
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