Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
virB1VirB1 protein. (244 aa)    
Predicted Functional Partners:
virB11
VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family.
 
   
 0.958
virB9
VirB9 protein.
 
   
 0.948
virB8
VirB8 protein.
 
   
 0.946
virB10
VirB10 protein.
 
   
 0.943
virB4
virB4 protein.
 
   
 0.938
virD4
VirD4 protein.
 
   
 0.901
virB2
VirB2 protein.
     
 0.824
virB3
VirB3 protein.
     
 0.697
virB7
virB7-like protein.
     
 0.591
virB6-2
VirB6 protein.
     
 0.577
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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