Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
virB11VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family. (346 aa)    
Predicted Functional Partners:
virB9
VirB9 protein.
 
  
 0.993
virB4
virB4 protein.
  
 0.992
virB10
VirB10 protein.
 
  
 0.989
virB8
VirB8 protein.
 
  
 0.988
virD4
VirD4 protein.
   
 0.974
virB1
VirB1 protein.
 
   
 0.958
virB3
VirB3 protein.
  
  
 0.858
virB2
VirB2 protein.
  
  
 0.855
virB6-2
VirB6 protein.
  
  
 0.752
virB6
VirB6 protein.
  
  
 0.718
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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