Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
virB10VirB10 protein. (409 aa)    
Predicted Functional Partners:
virB4
virB4 protein.
 
 0.999
virB9
VirB9 protein.
 
 0.999
virB8
VirB8 protein.
 
 
 0.999
virB11
VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.989
virB3
VirB3 protein.
  
 
 0.984
virB1
VirB1 protein.
 
   
 0.943
virB2
VirB2 protein.
  
  
 0.937
virB6-2
VirB6 protein.
  
 
 0.933
virD4
VirD4 protein.
 
 
 
 0.926
virB6
VirB6 protein.
  
 
 0.924
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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