GLE_2959 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE_2959

Linear gramicidin synthetase subunit D. (1535 aa)

Predicted Functional Partners:

GLE_1851

0.943

GLE_2621

0.935

GLE_2519

0.921

GLE_4894

0.911

GLE_2433

0.907

fabF

0.894

GLE_2500

0.818

hemL

0.816

GLE_2497

0.787

GLE_3677

0.780

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_1851	GLE_2497	GLE_1851	GLE_2497	AMP-binding enzyme.	mbtH family protein.	0.549
GLE_1851	GLE_2500	GLE_1851	GLE_2500	AMP-binding enzyme.	Malonyl CoA-acyl carrier protein transacylase.	0.891
GLE_1851	GLE_2519	GLE_1851	GLE_2519	AMP-binding enzyme.	Luciferase-like monooxygenase.	0.864
GLE_1851	GLE_2621	GLE_1851	GLE_2621	AMP-binding enzyme.	Condensation domain protein.	0.751
GLE_1851	GLE_2959	GLE_1851	GLE_2959	AMP-binding enzyme.	Linear gramicidin synthetase subunit D.	0.943
GLE_1851	GLE_3677	GLE_1851	GLE_3677	AMP-binding enzyme.	MbtH family protein.	0.568
GLE_1851	GLE_4894	GLE_1851	GLE_4894	AMP-binding enzyme.	Amino acid adenylation domain protein.	0.977
GLE_1851	fabF	GLE_1851	GLE_1694	AMP-binding enzyme.	3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.	0.895
GLE_1851	hemL	GLE_1851	GLE_0873	AMP-binding enzyme.	Glutamate-1-semialdehyde-2,1-aminomutase.	0.813
GLE_2433	GLE_2959	GLE_2433	GLE_2959	Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Linear gramicidin synthetase subunit D.	0.907
GLE_2433	GLE_4894	GLE_2433	GLE_4894	Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Amino acid adenylation domain protein.	0.973
GLE_2497	GLE_1851	GLE_2497	GLE_1851	mbtH family protein.	AMP-binding enzyme.	0.549
GLE_2497	GLE_2500	GLE_2497	GLE_2500	mbtH family protein.	Malonyl CoA-acyl carrier protein transacylase.	0.671
GLE_2497	GLE_2621	GLE_2497	GLE_2621	mbtH family protein.	Condensation domain protein.	0.906
GLE_2497	GLE_2959	GLE_2497	GLE_2959	mbtH family protein.	Linear gramicidin synthetase subunit D.	0.787
GLE_2497	GLE_4894	GLE_2497	GLE_4894	mbtH family protein.	Amino acid adenylation domain protein.	0.999
GLE_2500	GLE_1851	GLE_2500	GLE_1851	Malonyl CoA-acyl carrier protein transacylase.	AMP-binding enzyme.	0.891
GLE_2500	GLE_2497	GLE_2500	GLE_2497	Malonyl CoA-acyl carrier protein transacylase.	mbtH family protein.	0.671
GLE_2500	GLE_2519	GLE_2500	GLE_2519	Malonyl CoA-acyl carrier protein transacylase.	Luciferase-like monooxygenase.	0.560
GLE_2500	GLE_2959	GLE_2500	GLE_2959	Malonyl CoA-acyl carrier protein transacylase.	Linear gramicidin synthetase subunit D.	0.818