Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_2970Redoxin/antioxidant, AhpC/TSA family. (190 aa)    
Predicted Functional Partners:
GLE_2973
Signal transduction histidine kinase.
 
     0.792
GLE_2972
Transcriptional regulatory protein.
    
  0.762
GLE_2971
Hypothetical protein.
       0.752
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.728
GLE_2968
Hypothetical protein.
  
    0.654
GLE_2967
AP endonuclease, family 2; Belongs to the UPF0276 family.
       0.652
GLE_2969
Ferric reductase like transmembrane component protein.
       0.651
GLE_2974
Transcription factor.
       0.596
GLE_2966
EF hand domain protein.
       0.467
GLE_0075
Tetracycline resistance protein, class A (TetA(A)).
 
      0.441
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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