Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3073ABC transporter, ATP-binding protein. (635 aa)    
Predicted Functional Partners:
GLE_3072
Hypothetical protein.
       0.655
GLE_2901
Molybdopterin biosynthesis protein.
  
 
 
 0.511
yliI
Soluble aldose sugar dehydrogenase YliI precursor.
       0.504
GLE_3494
ATPase, AAA family protein; Belongs to the AAA ATPase family.
 
 
  0.501
GLE_3071
Hypothetical protein.
       0.485
GLE_5357
ABC transporter, ATP-binding protein.
 
  
 
0.446
GLE_3908
Histone deacetylase family.
   
  0.423
GLE_3673
ABC transporter, ATP-binding protein.
   
  0.404
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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