Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GLE_1262 | GLE_3076 | GLE_1262 | GLE_3076 | Nuclear protein SET. | Transcription-related protein. | 0.447 |
GLE_1262 | rpoA | GLE_1262 | GLE_3766 | Nuclear protein SET. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.710 |
GLE_1262 | rpoB | GLE_1262 | GLE_3797 | Nuclear protein SET. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.604 |
GLE_3076 | GLE_1262 | GLE_3076 | GLE_1262 | Transcription-related protein. | Nuclear protein SET. | 0.447 |
GLE_3076 | GLE_3077 | GLE_3076 | GLE_3077 | Transcription-related protein. | Hypothetical protein. | 0.572 |
GLE_3076 | GLE_3078 | GLE_3076 | GLE_3078 | Transcription-related protein. | Oxidoreductase FAD/NAD(P) binding domain protein. | 0.489 |
GLE_3076 | GLE_4479 | GLE_3076 | GLE_4479 | Transcription-related protein. | NLI interacting factor-like phosphatase. | 0.828 |
GLE_3076 | rpoA | GLE_3076 | GLE_3766 | Transcription-related protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.932 |
GLE_3076 | rpoB | GLE_3076 | GLE_3797 | Transcription-related protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.920 |
GLE_3076 | rpoz | GLE_3076 | GLE_0911 | Transcription-related protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.911 |
GLE_3077 | GLE_3076 | GLE_3077 | GLE_3076 | Hypothetical protein. | Transcription-related protein. | 0.572 |
GLE_3077 | GLE_3078 | GLE_3077 | GLE_3078 | Hypothetical protein. | Oxidoreductase FAD/NAD(P) binding domain protein. | 0.447 |
GLE_3078 | GLE_3076 | GLE_3078 | GLE_3076 | Oxidoreductase FAD/NAD(P) binding domain protein. | Transcription-related protein. | 0.489 |
GLE_3078 | GLE_3077 | GLE_3078 | GLE_3077 | Oxidoreductase FAD/NAD(P) binding domain protein. | Hypothetical protein. | 0.447 |
GLE_4479 | GLE_3076 | GLE_4479 | GLE_3076 | NLI interacting factor-like phosphatase. | Transcription-related protein. | 0.828 |
GLE_4479 | rpoA | GLE_4479 | GLE_3766 | NLI interacting factor-like phosphatase. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.973 |
GLE_4479 | rpoB | GLE_4479 | GLE_3797 | NLI interacting factor-like phosphatase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
GLE_4479 | rpoz | GLE_4479 | GLE_0911 | NLI interacting factor-like phosphatase. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.885 |
rpoA | GLE_1262 | GLE_3766 | GLE_1262 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Nuclear protein SET. | 0.710 |
rpoA | GLE_3076 | GLE_3766 | GLE_3076 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcription-related protein. | 0.932 |
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