GLE_3091 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE_3091

Two component transcriptional regulator, winged helix family. (255 aa)

Predicted Functional Partners:

GLE_0632

0.891

GLE_0164

0.655

GLE_1142

0.646

GLE_1143

0.646

GLE_4341

0.642

pilL

0.630

GLE_3438

0.559

GLE_2449

0.512

GLE_1781

0.511

ribB

0.472

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0164	GLE_0632	GLE_0164	GLE_0632	Sensory box histidine kinase.	Sensory box histidine kinase.	0.999
GLE_0164	GLE_1142	GLE_0164	GLE_1142	Sensory box histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.998
GLE_0164	GLE_1143	GLE_0164	GLE_1143	Sensory box histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.998
GLE_0164	GLE_1781	GLE_0164	GLE_1781	Sensory box histidine kinase.	Putative heavy metal histidine sensor kinase; Member of a two-component regulatory system.	0.842
GLE_0164	GLE_2449	GLE_0164	GLE_2449	Sensory box histidine kinase.	Histidine kinase.	0.996
GLE_0164	GLE_3091	GLE_0164	GLE_3091	Sensory box histidine kinase.	Two component transcriptional regulator, winged helix family.	0.655
GLE_0164	GLE_3438	GLE_0164	GLE_3438	Sensory box histidine kinase.	Diguanylate cyclase.	0.972
GLE_0164	GLE_4341	GLE_0164	GLE_4341	Sensory box histidine kinase.	Sensor histidine kinase.	0.760
GLE_0164	pilL	GLE_0164	GLE_3958	Sensory box histidine kinase.	Hpt domain protein; Response regulator receiver domain/histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CheW-like domain.	0.993
GLE_0164	ribB	GLE_0164	GLE_4152	Sensory box histidine kinase.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.944
GLE_0632	GLE_0164	GLE_0632	GLE_0164	Sensory box histidine kinase.	Sensory box histidine kinase.	0.999
GLE_0632	GLE_1142	GLE_0632	GLE_1142	Sensory box histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.994
GLE_0632	GLE_1143	GLE_0632	GLE_1143	Sensory box histidine kinase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.994
GLE_0632	GLE_1781	GLE_0632	GLE_1781	Sensory box histidine kinase.	Putative heavy metal histidine sensor kinase; Member of a two-component regulatory system.	0.847
GLE_0632	GLE_2449	GLE_0632	GLE_2449	Sensory box histidine kinase.	Histidine kinase.	0.997
GLE_0632	GLE_3091	GLE_0632	GLE_3091	Sensory box histidine kinase.	Two component transcriptional regulator, winged helix family.	0.891
GLE_0632	GLE_3438	GLE_0632	GLE_3438	Sensory box histidine kinase.	Diguanylate cyclase.	0.978
GLE_0632	GLE_4341	GLE_0632	GLE_4341	Sensory box histidine kinase.	Sensor histidine kinase.	0.766
GLE_0632	pilL	GLE_0632	GLE_3958	Sensory box histidine kinase.	Hpt domain protein; Response regulator receiver domain/histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CheW-like domain.	0.998
GLE_0632	ribB	GLE_0632	GLE_4152	Sensory box histidine kinase.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.945