Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3093Hemagglutinin. (1323 aa)    
Predicted Functional Partners:
GLE_4981
Hep/Hag repeat protein.
  
     0.766
GLE_3092
Hypothetical protein.
       0.572
GLE_4589
Outer membrane autotransporter barrel domain protein.
  
   
 0.568
creC
Sensor histidine kinase.
  
   
 0.541
GLE_4980
hemagglutinin/YadA-like C-terminal region.
  
  
 
0.541
GLE_1322
Rhs element Vgr protein.
  
     0.514
GLE_5133
TonB-dependent receptor.
  
     0.494
creD
Inner membrane protein CreD.
  
     0.466
GLE_0522
Hypothetical protein.
  
     0.464
GLE_3653
TonB-dependent receptor.
  
     0.451
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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