Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3113Zinc carboxypeptidase. (599 aa)    
Predicted Functional Partners:
GLE_3110
POT family.
 
     0.617
GLE_0536
Membrane associated hydrolase.
  
     0.577
GLE_4314
Nuclease.
  
     0.561
GLE_3115
Endonuclease/exonuclease/phosphatase family protein.
 
     0.517
GLE_3636
Prolyl oligopeptidase family.
  
     0.514
GLE_4950
Dipeptidyl peptidase IV.
 
     0.504
GLE_4313
Nuclease.
  
     0.503
GLE_2784
TonB-dependent outer membrane receptor.
  
     0.473
GLE_3114
Lipoprotein.
       0.449
eprA1
Extracellular protease.
  
     0.447
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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