GLE_3139 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_3139

HIT family hydrolase. (136 aa)

Predicted Functional Partners:

GLE_3138

0.846

GLE_3140

0.842

GLE_3141

0.832

glnA

0.694

yliG

0.677

cysN

0.661

GLE_2702

0.564

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_2702	GLE_3139	GLE_2702	GLE_3139	slyX family protein.	HIT family hydrolase.	0.564
GLE_3138	GLE_3139	GLE_3138	GLE_3139	Carboxymethylenebutenolidase.	HIT family hydrolase.	0.846
GLE_3138	GLE_3140	GLE_3138	GLE_3140	Carboxymethylenebutenolidase.	Hypothetical protein.	0.824
GLE_3138	GLE_3141	GLE_3138	GLE_3141	Carboxymethylenebutenolidase.	Allophanate hydrolase, subunit 2.	0.814
GLE_3138	yliG	GLE_3138	GLE_3137	Carboxymethylenebutenolidase.	MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	0.663
GLE_3139	GLE_2702	GLE_3139	GLE_2702	HIT family hydrolase.	slyX family protein.	0.564
GLE_3139	GLE_3138	GLE_3139	GLE_3138	HIT family hydrolase.	Carboxymethylenebutenolidase.	0.846
GLE_3139	GLE_3140	GLE_3139	GLE_3140	HIT family hydrolase.	Hypothetical protein.	0.842
GLE_3139	GLE_3141	GLE_3139	GLE_3141	HIT family hydrolase.	Allophanate hydrolase, subunit 2.	0.832
GLE_3139	cysN	GLE_3139	GLE_1238	HIT family hydrolase.	Bifunctional enzyme CysN/cysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.661
GLE_3139	glnA	GLE_3139	GLE_5142	HIT family hydrolase.	Glutamine synthetase, type I.	0.694
GLE_3139	yliG	GLE_3139	GLE_3137	HIT family hydrolase.	MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	0.677
GLE_3140	GLE_3138	GLE_3140	GLE_3138	Hypothetical protein.	Carboxymethylenebutenolidase.	0.824
GLE_3140	GLE_3139	GLE_3140	GLE_3139	Hypothetical protein.	HIT family hydrolase.	0.842
GLE_3140	GLE_3141	GLE_3140	GLE_3141	Hypothetical protein.	Allophanate hydrolase, subunit 2.	0.999
GLE_3140	glnA	GLE_3140	GLE_5142	Hypothetical protein.	Glutamine synthetase, type I.	0.603
GLE_3140	yliG	GLE_3140	GLE_3137	Hypothetical protein.	MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.	0.565
GLE_3141	GLE_3138	GLE_3141	GLE_3138	Allophanate hydrolase, subunit 2.	Carboxymethylenebutenolidase.	0.814
GLE_3141	GLE_3139	GLE_3141	GLE_3139	Allophanate hydrolase, subunit 2.	HIT family hydrolase.	0.832
GLE_3141	GLE_3140	GLE_3141	GLE_3140	Allophanate hydrolase, subunit 2.	Hypothetical protein.	0.999