Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3142ECF sigma factor family protein. (221 aa)    
Predicted Functional Partners:
pkn1
Serine/threonine-protein kinase Pkn1.
 
 
   0.909
GLE_3144
Protein kinase domain.
 
 
   0.905
pkn5
Serine/threonine-protein kinase Pkn5.
 
 
   0.789
GLE_1882
Serine/threonine protein kinase.
  
 
   0.750
GLE_5446
Serine/threonine protein kinase.
 
 
   0.748
pkn2
Serine/threonine-protein kinase Pkn2.
  
 
   0.742
GLE_3145
Hypothetical protein.
 
     0.656
GLE_1704
Anti sigma-E protein.
   
   0.571
GLE_4208
Efflux transporter, RND family, MFP subunit.
  
     0.462
GLE_4210
Efflux ABC transporter, permease protein.
  
     0.458
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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