Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_3144Protein kinase domain. (989 aa)    
Predicted Functional Partners:
GLE_3142
ECF sigma factor family protein.
 
 
   0.905
GLE_1662
Protein phosphatase 2C.
 
 
 0.808
GLE_2588
Phosphoprotein phosphatase.
 
 
 0.795
pkn1
Serine/threonine-protein kinase Pkn1.
 
    
0.786
GLE_0404
RNA polymerase sigma factor, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.747
GLE_0141
RNA polymerase sigma factor, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.742
GLE_1883
RNA polymerase sigma factor, ECF family; Belongs to the sigma-70 factor family.
  
 
   0.741
GLE_5445
RNA polymerase sigma factor, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.740
GLE_0632
Sensory box histidine kinase.
    
 0.577
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.555
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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